title	data_types	genome_or_study	accession	description	notes	data_links	references	reference_urls	verified_on
OSU TarKok 3.0	Genome assemblies; Gene & genome annotations	OSU TarKok 3.0	OH-1004 · version 3.0	Nuclear reference, structural and functional annotations, repeat features and comparative orthology.	Zenodo downloads pending. The release inventory lists 37 supplied files; a DOI and data links will be added after deposition.	https://rubber-dandelion-genomics.org/data/osu-tarkok-3.0-file-manifest.tsv	Vargas-Mejía P, Gutierrez-Manriquez C, Anderson ES, Williams DR, Vega-Arreguín J and Fresnedo-Ramírez J. From chromosome-scale assembly to the mappable genome of rubber dandelion: chromosome reorganization, rubber-pathway coordination, and domestication traits. Author-supplied manuscript v8.7.9 and OSU TarKok 3.0 release files; public article link and DOI pending.	https://rubber-dandelion-genomics.org/#data-notes	2026-10-14
TK1151	Genome assemblies; Gene & genome annotations	TK1151	GWHBCHF00000000	TK1151 chromosome-level nuclear assembly with gene annotation, transcripts, CDS and proteins.	Use matching assembly and annotation files from this accession.	https://ngdc.cncb.ac.cn/gwh/Assembly/19732/show; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.genome.fasta.gz; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.gff.gz; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.RNA.fasta.gz; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.CDS.fasta.gz; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.Protein.faa.gz	Lin T, Xu X, Du H, et al. (2022). Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. Science China Life Sciences 65:515–528.	https://doi.org/10.1007/s11427-021-2033-2	2026-10-14
TKS line 1151 · draft assembly	Genome assemblies; Gene & genome annotations	TKS line 1151 · draft	GWHAAAA00000000	Earlier line 1151 nuclear draft assembly and its deposited annotation. Keep this version separate from TK1151 chromosome-level resources.	Historical assembly; published online in 2017, in the 2018 journal issue.	https://ngdc.cncb.ac.cn/gwh/Assembly/1/show; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.genome.fasta.gz; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.gff.gz; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.RNA.fasta.gz; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.CDS.fasta.gz; https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.Protein.faa.gz	Lin T, Xu X, Ruan J, et al. (2018). Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis. National Science Review 5(1):78–87.	https://doi.org/10.1093/nsr/nwx101	2026-10-14
OSU TarKok 2.0	Genome assemblies; Gene & genome annotations	OSU TarKok 2.0	GCA_047496595.1	Public nuclear assembly and submitted annotation from Ohio State. NCBI Datasets provides the available sequence and annotation download options.	Earlier version. Do not use this accession as a download for OSU TarKok 3.0.	https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/	Ohio State University. OSU_TarKok_2.0, accession GCA_047496595.1, released 7 February 2025. Assembly and annotation metadata from NCBI Datasets.	https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/	2026-10-14
OH-1004 · PacBio HiFi	Genomic reads & mapping	OSU TarKok 3.0; OSU TarKok 2.0	SRR40405429	PacBio HiFi reads for OH-1004. BioProject PRJNA792143.	Shared source reads for OSU TarKok 2.0 and 3.0.	https://www.ncbi.nlm.nih.gov/sra/SRR40405429	Vargas-Mejía P, Gutierrez-Manriquez C, Anderson ES, Williams DR, Vega-Arreguín J and Fresnedo-Ramírez J. From chromosome-scale assembly to the mappable genome of rubber dandelion: chromosome reorganization, rubber-pathway coordination, and domestication traits. Author-supplied manuscript v8.7.9 and OSU TarKok 3.0 release files; public article link and DOI pending.; European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://rubber-dandelion-genomics.org/#data-notes; https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
OH-1004 · Omni-C	Genomic reads & mapping	OSU TarKok 3.0; OSU TarKok 2.0	SRR40405428	Omni-C long-range evidence for the OH-1004 chromosome framework. BioProject PRJNA792143.	Existing long-range library; no new Omni-C library was generated for version 3.0.	https://www.ncbi.nlm.nih.gov/sra/SRR40405428	Vargas-Mejía P, Gutierrez-Manriquez C, Anderson ES, Williams DR, Vega-Arreguín J and Fresnedo-Ramírez J. From chromosome-scale assembly to the mappable genome of rubber dandelion: chromosome reorganization, rubber-pathway coordination, and domestication traits. Author-supplied manuscript v8.7.9 and OSU TarKok 3.0 release files; public article link and DOI pending.; European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://rubber-dandelion-genomics.org/#data-notes; https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
OSU study · RNA-seq	RNA-seq	OSU TarKok 3.0	SRR40404971–SRR40404982	12 RNA-seq libraries associated with the OSU TarKok study. BioProject PRJNA792143.	ENA FASTQ links are included in the OSU run metadata download.	https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA792143%20AND%20RNA-Seq	Vargas-Mejía P, Gutierrez-Manriquez C, Anderson ES, Williams DR, Vega-Arreguín J and Fresnedo-Ramírez J. From chromosome-scale assembly to the mappable genome of rubber dandelion: chromosome reorganization, rubber-pathway coordination, and domestication traits. Author-supplied manuscript v8.7.9 and OSU TarKok 3.0 release files; public article link and DOI pending.; European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://rubber-dandelion-genomics.org/#data-notes; https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
OSU study · population resequencing	Genomic reads & mapping	OSU TarKok 3.0	SRR40406659–SRR40406866	208 low-pass whole-genome runs representing 187 BioSamples. BioProject PRJNA792143.	Run count is not individual count. These population samples are associated with the study; they are not all OH-1004.	https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA792143%20AND%20WGS%20AND%20ILLUMINA	Vargas-Mejía P, Gutierrez-Manriquez C, Anderson ES, Williams DR, Vega-Arreguín J and Fresnedo-Ramírez J. From chromosome-scale assembly to the mappable genome of rubber dandelion: chromosome reorganization, rubber-pathway coordination, and domestication traits. Author-supplied manuscript v8.7.9 and OSU TarKok 3.0 release files; public article link and DOI pending.; European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://rubber-dandelion-genomics.org/#data-notes; https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
OH-1004 · chloroplast	Chloroplast genomes; Gene & genome annotations	OSU TarKok 3.0	PZ899947.1	151,316 bp chloroplast sequence. The manuscript describes a reference-guided consensus.	The GenBank sequence is public. The six curated annotation files in the OSU release package await Zenodo deposition.	https://www.ncbi.nlm.nih.gov/nuccore/PZ899947.1; https://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?id=PZ899947.1&db=nuccore&report=fasta&retmode=text	Vargas-Mejía P, Gutierrez-Manriquez C, Anderson ES, Williams DR, Vega-Arreguín J and Fresnedo-Ramírez J. From chromosome-scale assembly to the mappable genome of rubber dandelion: chromosome reorganization, rubber-pathway coordination, and domestication traits. Author-supplied manuscript v8.7.9 and OSU TarKok 3.0 release files; public article link and DOI pending.; NCBI GenBank. Taraxacum kok-saghyz OH1004 chloroplast sequence, accession PZ899947.1. Public record checked 14 October 2026.	https://rubber-dandelion-genomics.org/#data-notes; https://www.ncbi.nlm.nih.gov/nuccore/PZ899947.1	2026-10-14
TKS chloroplast · KX198560.1	Chloroplast genomes; Gene & genome annotations	Other chloroplast references	KX198560.1	Complete chloroplast sequence and annotated GenBank record. RefSeq counterpart: NC_032057.1.	Use accession KX198560.1 for this record.	https://www.ncbi.nlm.nih.gov/nuccore/KX198560.1; https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=KX198560.1&rettype=fasta&retmode=text; https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=KX198560.1&rettype=gbwithparts&retmode=text	Zhang Y, Iaffaldano BJ, Zhuang X, Cardina J, Cornish K. (2017). Chloroplast genome resources and molecular markers differentiate rubber dandelion species from weedy relatives. BMC Plant Biology 17:34.	https://doi.org/10.1186/s12870-016-0967-1	2026-10-14
TKS chloroplast · Sadyrova et al. (2025)	Chloroplast genomes; Gene & genome annotations	Other chloroplast references	OSF 6AU8N	TKS chloroplast: FASTA, GFF3 and GenBank annotation in a four-species OSF archive.	TKS files are under chloroplast_genome/taraxacum_kok-saghyz/ inside the ZIP.	https://osf.io/6au8n/; https://osf.io/download/xb2ew/	Sadyrova G, Taskuzhina A, Pozharskiy A, et al. (2025). Insights into Biological and Ecological Features of Four Rare and Endemic Plants from the Northern Tian Shan (Kazakhstan). Plants 14(15):2305.	https://doi.org/10.3390/plants14152305	2026-10-14
TK1151 · sequencing & optical mapping	Genomic reads & mapping	TK1151	CRA010603 / PRJCA000437	PacBio RS II genomic reads (CRR730976), Illumina Hi-C (CRR730975) and BioNano optical mapping (CRR730974) associated with the TK1151 assembly.	Sequence reads and optical maps are different data types. See the GSA record for files.	https://ngdc.cncb.ac.cn/gsa/browse/CRA010603; https://download.cncb.ac.cn/gsa2/CRA010603/	Lin T, Xu X, Du H, et al. (2022). Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. Science China Life Sciences 65:515–528.	https://doi.org/10.1007/s11427-021-2033-2	2026-10-14
Tissue RNA-seq · Lin et al. (2018)	RNA-seq	TKS line 1151 · draft	CRA003851 / PRJCA000437	TKS tissue RNA-seq, including latex, leaves, roots, flower, peduncle and young stem; Illumina HiSeq X Ten paired-end data.	Original repository: PRJCA000437. Individual sample and run metadata are available from GSA.	https://ngdc.cncb.ac.cn/gsa/browse/CRA003851; https://download.cncb.ac.cn/gsa/CRA003851/	Lin T, Xu X, Ruan J, et al. (2018). Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis. National Science Review 5(1):78–87.	https://doi.org/10.1093/nsr/nwx101	2026-10-14
Taraxacum reference genomes — mixed-species project	Genomic reads & mapping	TK1151	PRJCA005187 / CRA004216	Reference-genome project covering T. kok-saghyz and T. mongolicum; sequencing data in CRA004216.	Mixed-species project. Check the organism on each sample before downloading.	https://ngdc.cncb.ac.cn/bioproject/browse/PRJCA005187; https://ngdc.cncb.ac.cn/gsa/browse/CRA004216	Lin T, Xu X, Du H, et al. (2022). Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. Science China Life Sciences 65:515–528.	https://doi.org/10.1007/s11427-021-2033-2	2026-10-14
Early and late flowering methylomes	Epigenomics	Other TKS studies	PRJNA1066591 / SRP484660	Whole-genome bisulfite sequencing of early- and late-flowering TKS plants. 15 TKS runs.	HiSeq X Ten.	https://www.ebi.ac.uk/ena/browser/view/PRJNA1066591	Roelfs et al. (2024). Epigenetic variation in early and late flowering plants of the rubber-producing Russian dandelion Taraxacum koksaghyz provides insights into the regulation of flowering time.	https://doi.org/10.1038/s41598-024-54862-8	2026-10-14
Asteraceae genome composition	Genomic reads & mapping	Other TKS studies	PRJNA288472 / SRP062241	TKS subset of a multispecies survey sequencing project. 1 TKS run.	Illumina HiSeq 1500.	https://www.ebi.ac.uk/ena/browser/view/PRJNA288472	Staton and Burke (2015). Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance.	https://doi.org/10.1186/s12864-015-1830-8	2026-10-14
Genomic reads for microsatellite marker development	Genomic reads & mapping	Other TKS studies	PRJNA505305 / SRP168541	One TKS genomic read dataset used in microsatellite marker development. 1 TKS run.	Illumina MiSeq. Submitted reads are described as trimmed in the source paper.	https://www.ebi.ac.uk/ena/browser/view/PRJNA505305	Nowicki et al. (2019). Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related species.	https://doi.org/10.1038/s41598-019-38532-8	2026-10-14
PAR gene conservation	Genomic reads & mapping	Other TKS studies	PRJEB40739 / ERP124401	TKS subset of a multispecies resequencing project. 1 TKS run.	Illumina HiSeq 2500.	https://www.ebi.ac.uk/ena/browser/view/PRJEB40739	Underwood et al. (2022). A PARTHENOGENESIS allele from apomictic dandelion can induce egg cell division without fertilization in lettuce.	https://doi.org/10.1038/s41588-021-00984-y	2026-10-14
Population genetic diversity	Genomic reads & mapping	Other TKS studies	PRJNA686722 / SRP299174	RAD-seq data for TKS genetic diversity analysis. 58 TKS runs.	Illumina HiSeq 1500.	https://www.ebi.ac.uk/ena/browser/view/PRJNA686722	Zhang et al. (2021). Genetic diversity and evolutionary patterns of Taraxacum kok-saghyz Rodin.	https://doi.org/10.1002/ece3.7622	2026-10-14
Comparative root transcriptomes	RNA-seq	Other TKS studies	PRJNA413689 / SRP119603	High-, low- and no-rubber samples; 454 cDNA sequencing. 3 TKS runs.	454 GS FLX Titanium.	https://www.ebi.ac.uk/ena/browser/view/PRJNA413689	Panara et al. (2018). Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants.	https://doi.org/10.1186/s12864-018-5287-4	2026-10-14
Developing ovaries	RNA-seq	Other TKS studies	PRJDB36270 / DRP014087	TKS subset of a sexual/apomictic dandelion comparison. Native project PRJCA027669; 9 TKS runs, not all 18 experiments in the multispecies project.	Illumina NovaSeq 6000.	https://www.ebi.ac.uk/ena/browser/view/PRJDB36270	European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
Ethephon-treated leaves	RNA-seq	Other TKS studies	PRJNA827459 / SRP370775	Transcriptomes for ethephon effects in TKS leaves. 15 TKS runs.	Illumina NovaSeq 6000.	https://www.ebi.ac.uk/ena/browser/view/PRJNA827459	Zhang et al. (2022). Metabolic and Transcriptomic Analyses Reveal the Effects of Ethephon on Taraxacum kok-saghyz Rodin.	https://doi.org/10.3390/molecules27113548	2026-10-14
Lysophosphatidylethanolamine-treated latex	RNA-seq	Other TKS studies	PRJNA918839 / SRP416123	Latex RNA-seq after foliar lysophosphatidylethanolamine application. 6 TKS runs.	HiSeq X Ten.	https://www.ebi.ac.uk/ena/browser/view/PRJNA918839	European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
Methyl jasmonate response	RNA-seq	Other TKS studies	PRJNA745038 / SRP327773	Transcriptome study of TKS response to methyl jasmonate; description verified in ENA project. 9 TKS runs.	Illumina HiSeq 4000.	https://www.ebi.ac.uk/ena/browser/view/PRJNA745038	European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
PEL-like overexpression	RNA-seq	Other TKS studies	PRJNA985648 / SRP444833	Pooled RNA-seq from PEL-like overexpression and near-isogenic lines. 2 TKS runs.	Illumina NovaSeq 6000.	https://www.ebi.ac.uk/ena/browser/view/PRJNA985648	Wolters et al. (2023). Overexpression of a pseudo-etiolated-in-light-like protein in Taraxacum koksaghyz leads to a pale green phenotype and enables transcriptome-based network analysis of photomorphogenesis and isoprenoid biosynthesis.	https://doi.org/10.3389/fpls.2023.1228961	2026-10-14
Root developmental transcriptomes	RNA-seq	Other TKS studies	PRJNA539838 / SRP198980	Root transcriptomes at different developmental stages; description verified in ENA project. 16 TKS runs.	BGISEQ-500.	https://www.ebi.ac.uk/ena/browser/view/PRJNA539838	European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.; Du et al. (2024). Genome-Wide Identification and Characterization of the HMGR Gene Family in Taraxacum kok-saghyz Provide Insights into Its Regulation in Response to Ethylene and Methyl Jsamonate Treatments. This paper reused the dataset; it is not identified here as the original deposition.	https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0; https://doi.org/10.3390/plants13182646	2026-10-14
Root transcriptomes: high- and low-rubber genotypes	RNA-seq	Other TKS studies	PRJNA361575 / SRP096889	Root RNA-seq from high- and low-rubber genotypes. 6 TKS runs.	Illumina HiSeq 2000.	https://www.ebi.ac.uk/ena/browser/view/PRJNA361575	Luo et al. (2017). Analysis of the first Taraxacum kok-saghyz transcriptome reveals potential rubber yield related SNPs.	https://doi.org/10.1038/s41598-017-09034-2	2026-10-14
TKS RNA-seq within an Asteraceae project	RNA-seq	Other TKS studies	PRJNA681093 / SRP320053	TKS RNA-seq records within a multi-species project whose title names Chrysanthemum lavandulifolium. The ENA taxon filter identifies 12 TKS runs; the entire project is not a TKS genome.	Illumina HiSeq 2000.	https://www.ebi.ac.uk/ena/browser/view/PRJNA681093	European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
TKS tissue expression study	RNA-seq	Other TKS studies	PRJNA1262623 / SRP585920	Different-tissue gene expression study; sample metadata verified in ENA. 15 TKS runs.	MGISEQ-2000RS.	https://www.ebi.ac.uk/ena/browser/view/PRJNA1262623	European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.; Wang et al. (2025). Geranyl Diphosphate Synthases GDS 1 and GDS7 Facilitate Natural Rubber Biosynthesis in Taraxacum kok-saghyz Roots. This paper reused the dataset; it is not identified here as the original deposition.	https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0; https://doi.org/10.3390/plants14192980	2026-10-14
Tissue transcriptomes	RNA-seq	Other TKS studies	PRJNA931633 / SRP421304	Normal TKS transcriptomes; ENA sample titles include LEV, LAT, and ROO. Tissue abbreviations are not expanded without independent evidence. 9 TKS runs.	Illumina HiSeq 4000.	https://www.ebi.ac.uk/ena/browser/view/PRJNA931633	European Nucleotide Archive. Public sequencing records for Taraxacum kok-saghyz (taxon 333970), retrieved 14 October 2026. Individual project records are linked in the catalog.	https://www.ebi.ac.uk/ena/portal/api/search?result=read_run&query=tax_eq%28333970%29&format=tsv&fields=run_accession%2Cstudy_accession%2Csecondary_study_accession%2Csample_accession%2Csecondary_sample_accession%2Cexperiment_accession%2Cscientific_name%2Cstudy_title%2Csample_title%2Cexperiment_title%2Clibrary_name%2Clibrary_strategy%2Clibrary_source%2Clibrary_selection%2Clibrary_layout%2Cinstrument_platform%2Cinstrument_model%2Cfastq_ftp%2Cfastq_md5%2Cfastq_bytes&limit=0	2026-10-14
Asteraceae phylogenomics	Genomic reads & mapping	Other TKS studies	PRJNA540287 / SRP199440	TKS subset of a multispecies target-capture project. 1 TKS run.	Illumina MiSeq.	https://www.ebi.ac.uk/ena/browser/view/PRJNA540287	Mandel et al. (2019). A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae.	https://doi.org/10.1073/pnas.1903871116	2026-10-14
TkCPT knockout transcriptomes	RNA-seq	TK20 · associated studies	PRJCA031751 / CRA020043	WT and TkCPT mutants in rubber particle biogenesis study; NGDC lists 15 BioSamples. Taxonomy is Taraxacum in the repository, but project title and cited paper explicitly identify T. kok-saghyz.	Genome TK20 is described in the associated paper as available on request; no public assembly download is listed here.	https://ngdc.cncb.ac.cn/bioproject/browse/PRJCA031751; https://ngdc.cncb.ac.cn/gsa/browse/CRA020043	Xu T, et al. (2025). Rubber biosynthesis drives the biogenesis and development of rubber particles, the rubber-producing organelles. Plant Biotechnology Journal.	https://doi.org/10.1111/pbi.70052	2026-10-14
WT and TkCPT1/2 mutant latex proteomics	Proteomics	TK20 · associated studies	OMIX007750	Open-access mass-spectrometry proteomics: 6 ZIP files for WT and double-mutant latex.	Repository entry lists open-access data; use the record to select files.	https://ngdc.cncb.ac.cn/omix/release/OMIX007750	Xu T, et al. (2025). Rubber biosynthesis drives the biogenesis and development of rubber particles, the rubber-producing organelles. Plant Biotechnology Journal.	https://doi.org/10.1111/pbi.70052	2026-10-14
Population diversity supplementary tables	Processed & supplementary data	Other TKS studies	10.5061/dryad.qnk98sfgh	Six supplementary Excel tables covering sample information, SNP summary statistics, candidate-gene annotations, AMOVA, Fst, and KEGG enrichment.	Six XLSX tables; this record does not provide a VCF, FASTA or raw sequencing reads.	https://doi.org/10.5061/dryad.qnk98sfgh	Zhang et al. (2021). Genetic diversity and evolutionary patterns of Taraxacum kok-saghyz Rodin.	https://doi.org/10.1002/ece3.7622	2026-10-14
Comparative TKS transcriptome assembly	Transcriptome assemblies	Other TKS studies	GFZW00000000.1	Public TSA version 01 from the comparative high- and low-rubber study. NCBI indexes 73,350 transcribed-RNA sequences totaling 52,923,428 bp.	Transcript sequences; not a nuclear genome or protein set.	https://www.ncbi.nlm.nih.gov/Traces/wgs/GFZW01; https://sra-download.ncbi.nlm.nih.gov/traces/wgs03/wgs_aux/GF/ZW/GFZW01/GFZW01.1.fsa_nt.gz; https://sra-download.ncbi.nlm.nih.gov/traces/wgs03/wgs_aux/GF/ZW/GFZW01/GFZW01.1.gbff.gz	Panara et al. (2018). Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants.	https://doi.org/10.1186/s12864-018-5287-4	2026-10-14